Stem-loop tni-mir-29b-1

Accession

MI0003406

Description

Tetraodon nigroviridis tni-mir-29b-1 precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

1 open access papers mention tni-mir-29b-1
(4 sentences)

Sequence

cuccagaagcugguuucacguggugguuuagaugugucuccucaucgucUAGCACCAUUUGAAAUCAGUGUucuugggg
((((((((((((((((((.((((((..(((((((((......)).))))))))))))).)))))))))).))).)))))

Structure

     -   -          c      gu       -  uc 
cucca gaa gcugguuuca guggug  uuagaug ug  u
||||| ||| |||||||||| ||||||  ||||||| ||   
ggggu cuU UGACUAAAGU UACCAC  GAUcugc ac  c
     u   G          U      --       u  uc 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 8673324-8673402 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-29b-1

Mature tni-miR-29b

• Accession: MIMAT0003056
• Description: Tetraodon nigroviridis tni-miR-29b mature miRNA
• Sequence: 50 - UAGCACCAUUUGAAAUCAGUGU - 71
• Evidence: not_experimental

References