miRBase entry: tni-mir-23a-1

Stem-loop tni-mir-23a-1


Accession
MI0003416
Description
Tetraodon nigroviridis tni-mir-23a-1 precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

gcuguggcggggaggguuccuggcaccgugauuugaugcacaaagacaaacaaaaAUCACAUUGCCAGGGAUUUCCAcccuuucacag
.((((((.((((.((((((((((((..(((((((...................)))))))..))))))))))..)).)))).))))))

Structure
g      c    a  --          cc       gaugcaca 
 cugugg gggg gg  guuccuggca  gugauuu        a
 |||||| |||| ||  ||||||||||  |||||||        a
 gacacu uccc CC  UAGGGACCGU  CACUAaa        g
-      u    A  UU          UA       aacaaaca 


Annotation confidence Not enough data
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Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
1: 16058791-16058878 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-23a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-23a

Accession MIMAT0002913
Description Tetraodon nigroviridis tni-miR-23a mature miRNA
Sequence 56 - AUCACAUUGCCAGGGAUUUCCA - 77
Evidence not_experimental

References