Stem-loop fru-mir-27c

Accession

MI0003431

Description

Fugu rubripes fru-mir-27c precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

ggcuguguggcggcaggacuuaacccacaugugagcagugagugugugccaugUUCACAGUGGUUAAGUUCUGCcgcc
........(((((((((((((((((.((.((((((((.((.((....)))))))))))))))))))))))))))))))

Structure

ggcugugu                 c  a        g  a  g 
        ggcggcaggacuuaacc ac ugugagca ug gu u
        ||||||||||||||||| || |||||||| || ||  
        ccgcCGUCUUGAAUUGG UG ACACUUgu ac cg g
--------                 -  -        -  -  u 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602539.1: 5648764-5648841 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-27c

Mature fru-miR-27c

• Accession: MIMAT0003077
• Description: Fugu rubripes fru-miR-27c mature miRNA
• Sequence: 54 - UUCACAGUGGUUAAGUUCUGC - 74
• Evidence: not_experimental

References