Stem-loop tni-mir-27c

Accession

MI0003432

Description

Tetraodon nigroviridis tni-mir-27c precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

ggcugugcggcggcaggacuuaacccacaugugaacagugagugugccgugUUCACAGUGGUUAAGUUCUGCcgcc
........(((((((((((((((((.((.((((((((..(......)..)))))))))))))))))))))))))))

Structure

ggcugugc                 c  a        gu ag 
        ggcggcaggacuuaacc ac ugugaaca  g  u
        ||||||||||||||||| || ||||||||  |   
        ccgcCGUCUUGAAUUGG UG ACACUUgu  c  g
--------                 -  -        gc gu 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

3: 8970174-8970249 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-27c

Mature tni-miR-27c

• Accession: MIMAT0003078
• Description: Tetraodon nigroviridis tni-miR-27c mature miRNA
• Sequence: 52 - UUCACAGUGGUUAAGUUCUGC - 72
• Evidence: not_experimental

References