Stem-loop fru-mir-20

Accession

MI0003443

Description

Fugu rubripes fru-mir-20 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

agcaguauUAAAGUGCUUAUAGUGCAGGUAGuuacugauggucuacugcagugugagcacuucuaguacuucuagaugca
((.((((((((((((((((((.(((((.(((...(....)..)))))))).))))))))))).))))))).)).......

Structure

-------  c       -           G     G   uua u 
       ag aguauUA AAGUGCUUAUA UGCAG UAG   c g
       || ||||||| ||||||||||| ||||| |||   |  
       uc ucaugau uucacgagugu acguc auc   g a
acguaga  u       c           g     -   -ug u 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602535.1: 14441541-14441620 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-20

Mature fru-miR-20

• Accession: MIMAT0003083
• Description: Fugu rubripes fru-miR-20 mature miRNA
• Sequence: 9 - UAAAGUGCUUAUAGUGCAGGUAG - 31
• Evidence: not_experimental

References