Stem-loop tni-mir-20

Accession

MI0003444

Description

Tetraodon nigroviridis tni-mir-20 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

gcaguauUAAAGUGCUUAUAGUGCAGGUAGuuuucucagggucuacugcaguaugagcacuucuaguacuucu
..((((((((((((((((((.(((((.(((............)))))))).))))))))))).)))))))...

Structure

-gc       -           G     G   uuuuc 
   aguauUA AAGUGCUUAUA UGCAG UAG     u
   ||||||| ||||||||||| ||||| |||      
   ucaugau uucacgaguau acguc auc     c
ucu       c           g     -   uggga 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

2: 12892487-12892559 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-20

Mature tni-miR-20

• Accession: MIMAT0003084
• Description: Tetraodon nigroviridis tni-miR-20 mature miRNA
• Sequence: 8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
• Evidence: not_experimental

References