Stem-loop fru-mir-16

Accession

MI0003471

Description

Fugu rubripes fru-mir-16 precursor miRNA

Gene family

MIPF0000006; mir-15

Sequence

gccacugugcugUAGCAGCACGUAAAUAUUGGAGuuaaggcucucugugauaccuccaguauugaucgugcugcugaagcaaagaugac
..((((.((((.((((((((((..((((((((((.((..((.....))..)).))))))))))...)))))))))).)))).)).))..

Structure

gc  -  g    g          -UA          u  ag  u 
  ca cu ugcu UAGCAGCACG   AAUAUUGGAG ua  gc c
  || || |||| ||||||||||   |||||||||| ||  || u
  gu ga acga gucgucgugc   uuaugaccuc au  ug c
ca  a  a    a          uag          c  ag  u 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602535.1: 12503814-12503902 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-16

Mature fru-miR-16

• Accession: MIMAT0003107
• Description: Fugu rubripes fru-miR-16 mature miRNA
• Sequence: 13 - UAGCAGCACGUAAAUAUUGGAG - 34
• Evidence: not_experimental

References