Stem-loop sequence rno-mir-383

Accession

MI0003478 (change log)

Description

Rattus norvegicus miR-383 stem-loop

Gene family

MIPF0000137; mir-383

Literature search

16 open access papers mention rno-mir-383
(45 sentences)

Stem-loop

   ----uccuca      aa    a        uug   gga 
5'           gaucag  ggug cuguggcu   ggu   u
             ||||||  |||| ||||||||   |||    
3'           cugguc  ucac gacaccga   cua   a
   acgagaaaga      cg    -        ---   auu 

Deep sequencing

66295 reads, 57.1 reads per million, 312 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr16: 57519675-57519748 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir383
• miRBase Tracker:MI0003478

Mature sequence rno-miR-383-5p

• Accession: MIMAT0003114
• Previous IDs: rno-miR-383
• Sequence: 5 - cagaucagaaggugacugugg - 25
• Deep sequencing: 65697 reads, 310 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-383-5p
  • miRDB:rno-miR-383-5p
  • microrna.org:rno-miR-383-5p

Mature sequence rno-miR-383-3p

• Accession: MIMAT0017197
• Previous IDs: rno-miR-383*
• Sequence: 47 - ccacagcacugccuggucaga - 67
• Deep sequencing: 597 reads, 93 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-383-3p
  • miRDB:rno-miR-383-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).