Stem-loop rno-mir-501

Accession

MI0003480

Description

Rattus norvegicus rno-mir-501 precursor miRNA

Gene family

MIPF0000139; mir-500

Literature search

4 open access papers mention rno-mir-501
(4 sentences)

Sequence

9119 reads, 20 reads per million, 453 experiments

gcucguccucucuAAUCCUUUGUCCCUGGGUGAaaaugcuauuuguaugcAAUGCACCCGGGCAAGGAUUUGGggaagguaagc
(((...(((((((((..(((((.(((.(((((....(((.........)))...)))))))))))))..)))))).)))..)))

Structure

   cgu   -      UC     U   U     Aaaa   uau 
gcu   ccu cucuAA  CUUUG CCC GGGUG    ugc   u
|||   ||| ||||||  ||||| ||| |||||    |||   u
cga   gga ggGGUU  GGAAC GGG CCCAC    Acg   g
   -au   a      UA     -   -     -GUA   uau 

Annotation confidence High

Genome context

chrX: 16117874-16117957 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-501

Mature rno-miR-501-5p

• Accession: MIMAT0003116
• Description: Rattus norvegicus rno-miR-501-5p mature miRNA
• Sequence: 14 - AAUCCUUUGUCCCUGGGUGA - 33
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-501-3p

• Accession: MIMAT0017198
• Description: Rattus norvegicus rno-miR-501-3p mature miRNA
• Sequence: 51 - AAUGCACCCGGGCAAGGAUUUGG - 73
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267