Stem-loop sequence rno-mir-361

Accession

MI0003481 (change log)

Description

Rattus norvegicus miR-361 stem-loop

Gene family

MIPF0000172; mir-361

Literature search

8 open access papers mention rno-mir-361
(13 sentences)

Stem-loop

        uu         --u  a    u    a  a 
5' gaagc  aucagaauc   cc gggg acuu uu u
   |||||  |||||||||   || |||| |||| ||  
3' cuuug  uagucuuag   gg cccc ugaa ag u
        cu         ugu  a    c    a  u 

Deep sequencing

132976 reads, 30.1 reads per million, 492 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 84708911-84708980 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000000174 ; Chm-201; intron 9

Database links

• EntrezGene:Mir361
• miRBase Tracker:MI0003481

Mature sequence rno-miR-361-5p

• Accession: MIMAT0003117
• Previous IDs: rno-miR-361
• Sequence: 6 - uuaucagaaucuccagggguac - 27
• Deep sequencing: 74056 reads, 490 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-361-5p
  • miRDB:rno-miR-361-5p
  • microrna.org:rno-miR-361-5p

Mature sequence rno-miR-361-3p

• Accession: MIMAT0017199
• Previous IDs: rno-miR-361*
• Sequence: 44 - cccccaggugugauucugauucgu - 67
• Deep sequencing: 58920 reads, 490 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-361-3p
  • miRDB:rno-miR-361-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).