Stem-loop sequence rno-mir-224

Accession

MI0003483 (change log)

Description

Rattus norvegicus miR-224 stem-loop

Gene family

MIPF0000088; mir-224

Literature search

11 open access papers mention rno-mir-224
(82 sentences)

Stem-loop

          ca         u   u      a u   ug  uu 
5' gggcuuu  agucacuag ggu ccguuu g aga  gu  u
   |||||||  ||||||||| ||| |||||| | |||  ||   
3' cccgaaa  ucagugauc ccg gguaaa c uuu  ua  u
          ca         -   u      a -   gu  cg 

Deep sequencing

6728 reads, 0.538 reads per million, 372 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 152223754-152223835 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000022431 ; Gabre-201; intron 7

  ENSRNOT00000039949 ; Gabre-202; intron 8

Database links

• EntrezGene:Mir224
• miRBase Tracker:MI0003483

Mature sequence rno-miR-224-5p

• Accession: MIMAT0003119
• Previous IDs: rno-miR-224
• Sequence: 8 - caagucacuagugguuccguuu - 29
• Deep sequencing: 6655 reads, 371 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-224-5p
  • miRDB:rno-miR-224-5p
  • microrna.org:rno-miR-224-5p

Mature sequence rno-miR-224-3p

• Accession: MIMAT0017200
• Previous IDs: rno-miR-224*
• Sequence: 55 - aaauggugcccuagugacuaca - 76
• Deep sequencing: 73 reads, 54 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-224-3p
  • miRDB:rno-miR-224-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).