Stem-loop sequence mmu-mir-483

Accession

MI0003484 (change log)

Symbol

MGI:Mir483

Description

Mus musculus miR-483 stem-loop

Gene family

MIPF0000180; mir-483

Literature search

37 open access papers mention mmu-mir-483
(425 sentences)

Stem-loop

          -          aa   aa   a u   uuu 
5' gaggggg aagacgggag  gag  ggg g ggu   u
   ||||||| ||||||||||  |||  ||| | |||    
3' cucucuu uucugcccuc  cuc  cuc c ccg   g
          g          cc   --   a u   ugg 

Deep sequencing

7625 reads, 50 reads per million, 82 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 142654924-142654996 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000111235 ; Igf2-007; intron 1

  OTTMUST00000035617 ; Igf2-001; intron 2

  OTTMUST00000035618 ; Igf2-002; intron 2

  OTTMUST00000035619 ; Igf2-003; intron 2

  OTTMUST00000035620 ; Igf2-004; intron 2

  OTTMUST00000035621 ; Igf2-005; intron 2

  ENSMUST00000178921 ; Igf2-007; intron 1

  ENSMUST00000000033 ; Igf2-001; intron 2

  ENSMUST00000121128 ; Igf2-002; intron 2

  ENSMUST00000105936 ; Igf2-003; intron 2

  ENSMUST00000105935 ; Igf2-004; intron 2

  ENSMUST00000145896 ; Igf2-005; intron 2

  ENSMUST00000097936 ; Igf2-201; intron 2

Database links

• EntrezGene:Mir483
• MGI:Mir483
• RNAcentral:URS000075A74F_10090
• miRBase Tracker:MI0003484

Mature sequence mmu-miR-483-5p

• Accession: MIMAT0004782
• Previous IDs: mmu-miR-483
• Sequence: 8 - aagacgggagaagagaagggag - 29
• Deep sequencing: 3933 reads, 75 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00002AD012_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-483-5p
  • miRDB:mmu-miR-483-5p
  • microrna.org:mmu-miR-483-5p

Mature sequence mmu-miR-483-3p

• Accession: MIMAT0003120
• Previous IDs: mmu-miR-483;mmu-miR-483*
• Sequence: 45 - ucacuccuccccucccgucuu - 65
• Deep sequencing: 3691 reads, 52 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00003911EF_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-483-3p.2
  • miRDB:mmu-miR-483-3p
  • microrna.org:mmu-miR-483-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).