Stem-loop rno-mir-370

Accession

MI0003486

Description

Rattus norvegicus rno-mir-370 precursor miRNA

Gene family

MIPF0000167; mir-370

Literature search

14 open access papers mention rno-mir-370
(28 sentences)

Sequence

6690 reads, 42 reads per million, 217 experiments

agacagagagacCAGGUCACGUCUCUGCAGUUACACagcucaugaguGCCUGCUGGGGUGGAACCUGGUuugucugucu
(((((((.(((((((((..((((((.((((.(((.((.....)).))).)))).))))))..))))))))).)))))))

Structure

       g         CA      U    U   A  g 
agacaga agacCAGGU  CGUCUC GCAG UAC Ca c
||||||| |||||||||  |||||| |||| ||| || u
ucugucu uuUGGUCCA  GUGGGG CGUC Gug gu c
       g         AG      U    C   a  a 

Annotation confidence High

Genome context

chr6: 133739916-133739994 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-370

Mature rno-miR-370-5p

• Accession: MIMAT0017202
• Description: Rattus norvegicus rno-miR-370-5p mature miRNA
• Sequence: 13 - CAGGUCACGUCUCUGCAGUUACAC - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-370-3p

• Accession: MIMAT0003122
• Description: Rattus norvegicus rno-miR-370-3p mature miRNA
• Sequence: 48 - GCCUGCUGGGGUGGAACCUGGU - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267