miRBase entry: rno-mir-377

Stem-loop rno-mir-377


Accession
MI0003487
Description
Rattus norvegicus rno-mir-377 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
14 open access papers mention rno-mir-377
(102 sentences)

Sequence

6069 reads, 22 reads per million, 272 experiments
cuugagcAGAGGUUGCCCUUGGUGAAUUCgcuuuauugauguUGAAUCACACAAAGGCAACUUUUgguugag
(((((.(((((((((((.(((((((.(((((.........).)))))))).))).))))))))))).)))))

Structure
     g           C   -    A    - uuu 
cuuga cAGAGGUUGCC UUG GUGA UUCg c   a
||||| ||||||||||| ||| |||| |||| |   u
gaguu gUUUUCAACGG AAC CACU AAGU g   u
     g           A   A    -    u uag 


Annotation confidence High
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Genome context
chr6: 133890690-133890761 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from rno-mir-377
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-377-5p

Accession MIMAT0017203
Description Rattus norvegicus rno-miR-377-5p mature miRNA
Sequence 8 - AGAGGUUGCCCUUGGUGAAUUC - 29
Evidence experimental
SOLiD [2]

Mature rno-miR-377-3p

Accession MIMAT0003123
Description Rattus norvegicus rno-miR-377-3p mature miRNA
Sequence 43 - UGAAUCACACAAAGGCAACUUUU - 65
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267