miRBase entry: ppt-MIR534a

Stem-loop ppt-MIR534a


Accession
MI0003501
Description
Physcomitrella patens ppt-MIR534a precursor miRNA
Gene family
MIPF0000377; MIR534

Literature search
1 open access papers mention ppt-MIR534a
(2 sentences)

Sequence

auaugcaugcaacuuguguggacagacugacuagucuagugguguaguggaaaguauuaguugguugaugcacgauguuguuuugcaacaagugacucgucgcugcaauacugaacccacaaguuuuggaaguuguuuugauuggggccacccacauugcucgacuagauucagUAUGUCCAUUGCAGUUGCAUACauau
(((((.((((((((...(((((((.(((((((((((.((((((((.((((..((((((.((.(((.(((((((..((((((...)))))).)))...)))))))))))))))....)))).....((((((....))))))..(((....))))))))))).))))))..))))).)))))))...)))))))).)))))

Structure
     c        ugu       g     --      u        --------------------------------a    --aa      a  u   u    ---   ga      u 
auaug augcaacu   guggaca acuga  cuaguc aguggugu                                 gugg    aguauu gu ggu gaug   cac  uguugu  
||||| ||||||||   ||||||| |||||  |||||| ||||||||                                 ||||    |||||| || ||| ||||   |||  |||||| u
uauaC UACGUUGA   UACCUGU Ugacu  gaucag ucguuaca                                 cacc    ucauaa cg ucg cugc   gug  acaacg  
     A        CGU       A     ua      c        cccaccgggguuaguuuuguugaagguuuugaa    caag      -  -   -    uca   -a      u 


Annotation confidence Not enough data
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Genome context
Chr16: 5980156-5980355 [-]

Database links

Mature ppt-miR534a

Accession MIMAT0003138
Description Physcomitrella patens ppt-miR534a mature miRNA
Sequence 175 - UAUGUCCAUUGCAGUUGCAUAC - 196
Evidence experimental
cloned [1], 454 [3]

References

  1. PubMed ID: 16146523
    Cloning and characterization of micro-RNAs from moss
    "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
    "Plant J (2005) 43:837-848

  2. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  3. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769