miRBase entry: ppt-MIR535a

Stem-loop ppt-MIR535a


Accession
MI0003502
Description
Physcomitrella patens ppt-MIR535a precursor miRNA
Gene family
MIPF0000136; MIR535

Literature search
2 open access papers mention ppt-MIR535a
(3 sentences)

Sequence

ggaggugaaacgguggagaaccuaggUGACAACGAGAGAGAGCACGCuggaaugcuuuucaugcaauacgcuuggauguguucuagcgugcccucuaccguugucgccaaacaucuucuccaugacuucuccucu
(((((.(((...((((((((....((((((((((..((((.((((((((((((((..((((.((.....)).)))).)))))))))))))).))))..)))))))))).......))))))))...))).)))))

Structure
     u   acg        ---ccua          AG    A              uu    u  a 
ggagg gaa   guggagaa       ggUGACAACG  AGAG GCACGCuggaaugc  uuca gc a
||||| |||   ||||||||       ||||||||||  |||| ||||||||||||||  |||| || u
ucucc cuu   uaccucuu       ccgcuguugc  ucuc cgugcgaucuugug  aggu cg a
     u   cag        cuacaaa          ca    c              -u    u  c 


Annotation confidence Not enough data
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Genome context
Chr08: 9104145-9104279 [+]

Database links

Mature ppt-miR535a

Accession MIMAT0003139
Description Physcomitrella patens ppt-miR535a mature miRNA
Sequence 27 - UGACAACGAGAGAGAGCACGC - 47
Evidence experimental
cloned [1-2], 454 [3]

References

  1. PubMed ID: 16146523
    Cloning and characterization of micro-RNAs from moss
    "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
    "Plant J (2005) 43:837-848

  2. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  3. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769