miRBase entry: ppt-MIR535c

Stem-loop ppt-MIR535c


Accession
MI0003504
Description
Physcomitrella patens ppt-MIR535c precursor miRNA
Gene family
MIPF0000136; MIR535

Literature search
2 open access papers mention ppt-MIR535c
(3 sentences)

Sequence

gUGACAACGAGAGAGAGCACGCuggaaugcuuucacgcaauaagccuggauguguucuugcgugcccuuucccguugucgc
(((((((((.(((((.((((((.(((((((.((((.((.....)).)))).))))))).)))))).))))).)))))))))

Structure
         A     A      u       u    c  a 
gUGACAACG GAGAG GCACGC ggaaugc uuca gc a
||||||||| ||||| |||||| ||||||| |||| || u
cgcuguugc cuuuc cgugcg ucuugug aggu cg a
         c     c      u       u    c  a 


Annotation confidence Not enough data
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Genome context
Chr24: 12589745-12589825 [-]

Database links

Mature ppt-miR535c

Accession MIMAT0003141
Description Physcomitrella patens ppt-miR535c mature miRNA
Sequence 2 - UGACAACGAGAGAGAGCACGC - 22
Evidence experimental
cloned [1-2], 454 [3]

References

  1. PubMed ID: 16146523
    Cloning and characterization of micro-RNAs from moss
    "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
    "Plant J (2005) 43:837-848

  2. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  3. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769