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miRBase |
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Stem-loop sequence mmu-mir-540 |
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Accession | MI0003518 (change log) | |||||||||||||||||||||||||||||
Symbol | MGI:Mir540 | |||||||||||||||||||||||||||||
Description | Mus musculus miR-540 stem-loop | |||||||||||||||||||||||||||||
Gene family | MIPF0000212; mir-540 | |||||||||||||||||||||||||||||
Literature search |
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5 open access papers mention mmu-mir-540 | |||||||||||||||||||||||||||||
Stem-loop |
a ac u -g 5' ugggcc aggguc ccucugac cugu gcca |||||| |||||| |||||||| |||| ||| a 3' auccgg uccuag ggagacug gaca uggg g cu - ga |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence mmu-miR-540-5p |
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Accession | MIMAT0004786 |
Sequence |
6 - caagggucacccucugacucugu - 28 |
Deep sequencing | 3471 reads, 69 experiments |
Evidence | experimental; cloned [3], Illumina [4-5] |
Database links |
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Predicted targets |
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Mature sequence mmu-miR-540-3p |
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Accession | MIMAT0003167 |
Previous IDs | mmu-miR-540 |
Sequence |
43 - aggucagaggucgauccugg - 62 |
Deep sequencing | 25961 reads, 80 experiments |
Evidence | experimental; cloned [1,3], miRAP-cloned [2], Illumina [4] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:16274478
"Identification of clustered microRNAs using an ab initio prediction method"
BMC Bioinformatics. 6:267(2005).
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2 |
PMID:16973894
"Mouse microRNA profiles determined with a new and sensitive cloning method"
Nucleic Acids Res. 34:e115(2006).
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3 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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4 |
PMID:20215419
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
Mol Hum Reprod. 16:463-471(2010).
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5 |
PMID:20413612
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
Genes Dev. 24:992-1009(2010).
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