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miRBase |
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Stem-loop sequence mmu-mir-539 |
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Accession | MI0003520 (change log) | |||||||||||||||||||||||||||||||||
Symbol | MGI:Mir539 | |||||||||||||||||||||||||||||||||
Description | Mus musculus miR-539 stem-loop | |||||||||||||||||||||||||||||||||
Gene family | MIPF0000018; mir-154 | |||||||||||||||||||||||||||||||||
Literature search |
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11 open access papers mention mmu-mir-539 | |||||||||||||||||||||||||||||||||
Stem-loop |
ug g - g cu u 5' uacu aggagaaauuauccuug ugug uu g c u |||| ||||||||||||||||| |||| || | | 3' auga uuuucuuuaauaggaac auac aa u g u gu - u g ag u |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence mmu-miR-539-5p |
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Accession | MIMAT0003169 |
Previous IDs | mmu-miR-539 |
Sequence |
8 - ggagaaauuauccuuggugugu - 29 |
Deep sequencing | 2962 reads, 50 experiments |
Evidence | experimental; MPSS [2], miRAP-cloned [3], Illumina [4-5] |
Database links |
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Predicted targets |
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Mature sequence mmu-miR-539-3p |
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Accession | MIMAT0017208 |
Sequence |
48 - cauacaaggauaauuucuuuuu - 69 |
Deep sequencing | 618 reads, 44 experiments |
Evidence | experimental; Illumina [5] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:16274478
"Identification of clustered microRNAs using an ab initio prediction method"
BMC Bioinformatics. 6:267(2005).
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2 |
PMID:16582102
"The expression profile of microRNAs in mouse embryos"
Nucleic Acids Res. 34:1765-1771(2006).
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3 |
PMID:16973894
"Mouse microRNA profiles determined with a new and sensitive cloning method"
Nucleic Acids Res. 34:e115(2006).
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4 |
PMID:20215419
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
Mol Hum Reprod. 16:463-471(2010).
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5 |
PMID:20413612
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
Genes Dev. 24:992-1009(2010).
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