Stem-loop sequence mmu-mir-369

Accession

MI0003535

Symbol

MGI:Mir369

Description

Mus musculus miR-369 stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

      u  ag               ua      cuu g 
gguacu ga  ggagaucgaccgugu  uauucg   g c
|||||| ||  |||||||||||||||  ||||||   | u
cuauga cu  uuucuaguugguaca  auaagc   c g
      -  cu               ua      -uu a 

Deep sequencing

68754 reads, 72 experiments

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCm38): chr12: 109743418-109743496 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-369

• mmu-mir-382: chr12: 109733771-109733846 [+]
• mmu-mir-134: chr12: 109734139-109734209 [+]
• mmu-mir-668: chr12: 109734732-109734797 [+]
• mmu-mir-485: chr12: 109734902-109734974 [+]
• mmu-mir-453: chr12: 109735619-109735700 [+]
• mmu-mir-154: chr12: 109738433-109738498 [+]
• mmu-mir-496a: chr12: 109739119-109739197 [+]
• mmu-mir-377: chr12: 109740510-109740577 [+]
• mmu-mir-541: chr12: 109742409-109742498 [+]
• mmu-mir-409: chr12: 109743158-109743236 [+]
• mmu-mir-412: chr12: 109743289-109743368 [+]
• mmu-mir-369: chr12: 109743418-109743496 [+]
• mmu-mir-410: chr12: 109743715-109743795 [+]
• mmu-mir-3072: chr12: 109747878-109747960 [+]

Database links

• ENTREZGENE: 723933;Mir369
• MGI: 3619374;Mir369

Mature sequence mmu-miR-369-5p

• Accession: MIMAT0003185
• Sequence: 14 - agaucgaccguguuauauucgc - 35
• Deep sequencing: 14134 reads, 54 experiments
• Evidence: experimental; cloned [1-2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-369-5p
  • MICRORNA.ORG:mmu-miR-369-5p
  • MIRDB:mmu-miR-369-5p
  • RNA22-MMU:mmu-miR-369-5p
  • TARGETSCAN-VERT:mmu-miR-369-5p

Mature sequence mmu-miR-369-3p

• Accession: MIMAT0003186
• Sequence: 49 - aauaauacaugguugaucuuu - 69
• Deep sequencing: 54591 reads, 63 experiments
• Evidence: experimental; cloned [1-2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-369-3p
  • MICRORNA.ORG:mmu-miR-369-3p
  • MIRDB:mmu-miR-369-3p
  • RNA22-MMU:mmu-miR-369-3p
  • TARGETSCAN-VERT:mmu-miR-369-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).