Stem-loop sequence rno-mir-379

Accession MI0003541
Description Rattus norvegicus miR-379 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop 
u  uuc   c    g    a       ga       -  uua 
 gg   cug agag uggu gacuaug  acguagg cg   u
 ||   ||| |||| |||| |||||||  ||||||| ||   g
 cc   gac ucuc auca cugguac  uguaucc gu   u
a  uau   -    a    c       aa       a  cuu
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134388198-134388282 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-379
rno-mir-379 6: 134388198-134388282 [+]
rno-mir-411 6: 134389347-134389422 [+]
rno-mir-299b 6: 134389793-134389910 [-]
rno-mir-299a 6: 134389822-134389884 [+]
rno-mir-3579 6: 134390971-134391083 [-]
rno-mir-380 6: 134390988-134391064 [+]
rno-mir-323 6: 134391697-134391782 [+]
rno-mir-758 6: 134391996-134392073 [+]
rno-mir-329 6: 134392666-134392762 [+]
rno-mir-494 6: 134394868-134394950 [+]
rno-mir-679 6: 134395062-134395198 [+]
rno-mir-666 6: 134397021-134397119 [+]
rno-mir-543 6: 134397158-134397237 [+]
Database links
  • ENTREZGENE: 100314168;Mir379

Mature sequence rno-miR-379-5p

Accession MIMAT0003192
Previous IDs rno-miR-379
Sequence

16 -  

ugguagacuauggaacguagg

 - 36

Get sequence
Evidence experimental; cloned [2], SOLiD [3]
Predicted targets

Mature sequence rno-miR-379-3p

Accession MIMAT0004791
Previous IDs rno-miR-379*
Sequence

52 -  

cuauguaacaugguccacuaac

 - 73

Get sequence
Evidence experimental; cloned [2], SOLiD [3]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).