Stem-loop rno-mir-379

Accession

MI0003541

Description

Rattus norvegicus rno-mir-379 precursor miRNA

Gene family

MIPF0000126; mir-379

Literature search

5 open access papers mention rno-mir-379
(19 sentences)

Sequence

56403 reads, 102 reads per million, 389 experiments

ugguuccugcagaggUGGUAGACUAUGGAACGUAGGcguuauguuucugacCUAUGUAACAUGGUCCACUAACucucaguaucca
(((...(((.((((..(((.(((((((..(((((((((.........)).)))))))..))))))).)))..)))))))...)))

Structure

   uuc   c    gU   A       GA       -  uua 
ugg   cug agag  GGU GACUAUG  ACGUAGG cg   u
|||   ||| ||||  ||| |||||||  ||||||| ||   g
acc   gac ucuC  UCA CUGGUAC  UGUAUCc gu   u
   uau   -    AA   C       AA       a  cuu 

Annotation confidence High

Genome context

chr6: 133857700-133857784 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from rno-mir-379

Mature rno-miR-379-5p

• Accession: MIMAT0003192
• Description: Rattus norvegicus rno-miR-379-5p mature miRNA
• Sequence: 16 - UGGUAGACUAUGGAACGUAGG - 36
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-379-3p

• Accession: MIMAT0004791
• Description: Rattus norvegicus rno-miR-379-3p mature miRNA
• Sequence: 52 - CUAUGUAACAUGGUCCACUAAC - 73
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267