Stem-loop sequence rno-mir-494

Accession MI0003542
Description Rattus norvegicus miR-494 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
u      u            gu      -   c   -  uuu 
 gauacu gaaggagagguu  ccgugu ugu uuc uc   a
 |||||| ||||||||||||  |||||| ||| ||| ||   u
 cuauga uuuuuucuccaa  ggcaca aca aag ag   u
a      -            ag      u   -   u  uau
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134394868-134394950 [+]
sense
ENSRNOT00000054367 ; Mir494; exon 1
ENSRNOT00000054367 ; Mir494; exon 1
ENSRNOT00000054367 ; Mir494; exon 1
Clustered miRNAs
< 10kb from rno-mir-494
rno-mir-379 6: 134388198-134388282 [+]
rno-mir-411 6: 134389347-134389422 [+]
rno-mir-299b 6: 134389793-134389910 [-]
rno-mir-299a 6: 134389822-134389884 [+]
rno-mir-3579 6: 134390971-134391083 [-]
rno-mir-380 6: 134390988-134391064 [+]
rno-mir-323 6: 134391697-134391782 [+]
rno-mir-758 6: 134391996-134392073 [+]
rno-mir-329 6: 134392666-134392762 [+]
rno-mir-494 6: 134394868-134394950 [+]
rno-mir-679 6: 134395062-134395198 [+]
rno-mir-666 6: 134397021-134397119 [+]
rno-mir-543 6: 134397158-134397237 [+]
rno-mir-495 6: 134399218-134399297 [+]
rno-mir-667 6: 134400500-134400591 [+]
rno-mir-376c 6: 134403524-134403607 [+]
rno-mir-376b 6: 134404180-134404265 [+]
rno-mir-3595 6: 134404672-134404791 [-]
rno-mir-376a 6: 134404690-134404771 [+]
Database links
  • ENTREZGENE: 100314082;Mir494

Mature sequence rno-miR-494-5p

Accession MIMAT0017218
Previous IDs rno-miR-494*
Sequence

16 -  

agguuguccguguugucuucuc

 - 37

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-494-3p

Accession MIMAT0003193
Previous IDs rno-miR-494
Sequence

49 -  

ugaaacauacacgggaaaccucu

 - 71

Get sequence
Evidence experimental; SOLiD [2]
Validated targets
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).