Stem-loop sequence rno-mir-376c

Accession

MI0003543 (change log)

Description

Rattus norvegicus miR-376c stem-loop

Gene family

MIPF0000091; mir-368

Literature search

8 open access papers mention rno-mir-376c
(50 sentences)

Stem-loop

   u  gu   u    g     ua     u         uggua 
5'  ug  auu aaaa gugga  uuccu cuauguuua     u
    ||  ||| |||| |||||  ||||| |||||||||     u
3'  ac  uga uuuu cacuu  aagga gauacaaau     u
   a  ug   c    g     ua     -         uagua 

Deep sequencing

42384 reads, 21.2 reads per million, 396 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133872439-133872522 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-376c

• rno-mir-494: chr6: 133864370-133864452 [+]
• rno-mir-679: chr6: 133864564-133864700 [+]
• rno-mir-1193: chr6: 133864698-133864817 [+]
• rno-mir-666: chr6: 133866523-133866621 [+]
• rno-mir-543: chr6: 133866660-133866739 [+]
• rno-mir-495: chr6: 133868288-133868367 [+]
• rno-mir-667: chr6: 133869570-133869661 [+]
• rno-mir-376c: chr6: 133872439-133872522 [+]
• rno-mir-376b: chr6: 133873095-133873180 [+]
• rno-mir-3595: chr6: 133873587-133873706 [-]
• rno-mir-376a: chr6: 133873605-133873686 [+]
• rno-mir-300: chr6: 133874152-133874230 [+]
• rno-mir-381: chr6: 133876615-133876675 [+]
• rno-mir-487b: chr6: 133877124-133877205 [+]
• rno-mir-3576: chr6: 133877812-133877926 [-]
• rno-mir-539: chr6: 133877832-133877907 [+]
• rno-mir-6331: chr6: 133878578-133878700 [+]
• rno-mir-544: chr6: 133879169-133879246 [+]

Database links

• EntrezGene:Mir376c
• miRBase Tracker:MI0003543

Mature sequence rno-miR-376c-5p

• Accession: MIMAT0017219
• Previous IDs: rno-miR-376c*
• Sequence: 15 - guggauauuccuucuauguuu - 35
• Deep sequencing: 30412 reads, 350 experiments
• Evidence: experimental; SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-376c-5p
  • miRDB:rno-miR-376c-5p

Mature sequence rno-miR-376c-3p

• Accession: MIMAT0003194
• Previous IDs: rno-miR-376c
• Sequence: 52 - aacauagaggaaauuucacgu - 72
• Deep sequencing: 11972 reads, 343 experiments
• Evidence: experimental; cloned [2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-376c-3p
  • miRDB:rno-miR-376c-3p
  • microrna.org:rno-miR-376c-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).