miRBase entry: rno-mir-376b

Stem-loop rno-mir-376b


Accession
MI0003544
Description
Rattus norvegicus rno-mir-376b precursor miRNA
Gene family
MIPF0000091; mir-368

Literature search
13 open access papers mention rno-mir-376b
(98 sentences)

Sequence

39466 reads, 74 reads per million, 372 experiments
uuugguauuuaaaagGUGGAUAUUCCUUCUAUGGUUAcgugcuuccuggauaAUCAUAGAGGAACAUCCACUUuuucaguaucaaa
.((((((((.(((((((((((.(((((.((((((((((..........).)))))))))))))).))))))))))).)))))))).

Structure
u        u           A     U         - gugc 
 uugguauu aaaagGUGGAU UUCCU CUAUGGUUA c    u
 |||||||| ||||||||||| ||||| ||||||||| |     
 aacuauga uuuUUCACCUA AAGGA GAUACUAau g    u
a        c           C     -         a gucc 


Annotation confidence High
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Genome context
chr6: 133873095-133873180 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from rno-mir-376b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-376b-5p

Accession MIMAT0003195
Description Rattus norvegicus rno-miR-376b-5p mature miRNA
Sequence 16 - GUGGAUAUUCCUUCUAUGGUUA - 37
Evidence experimental
cloned [2-3], SOLiD [4]

Mature rno-miR-376b-3p

Accession MIMAT0003196
Description Rattus norvegicus rno-miR-376b-3p mature miRNA
Sequence 53 - AUCAUAGAGGAACAUCCACUU - 73
Evidence experimental
cloned [2], SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714

  4. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267