Stem-loop rno-mir-382

Accession

MI0003548

Description

Rattus norvegicus rno-mir-382 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

10 open access papers mention rno-mir-382
(154 sentences)

Sequence

68168 reads, 5035 reads per million, 409 experiments

gguacuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuugugacgAAUCAUUCACGGACAACACUUuuuucaguacc
((((((.(((((((.(((((((((((..(((((((.........).))))))..)))))))))))..)))))))))))))

Structure

      u       -A           UG      - uuu 
gguacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||||| |||||||  |||||||||||  |||||| |   c
ccauga cuuuuUU  CAACAGGCACU  CUAAgc g   u
      -       CA           UA      a ugu 

Annotation confidence High

Genome context

chr6: 133884178-133884257 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from rno-mir-382

Mature rno-miR-382-5p

• Accession: MIMAT0003201
• Description: Rattus norvegicus rno-miR-382-5p mature miRNA
• Sequence: 13 - GAAGUUGUUCGUGGUGGAUUCG - 34
• Evidence: experimental ; cloned [3], SOLiD [4]

Mature rno-miR-382-3p

• Accession: MIMAT0003202
• Description: Rattus norvegicus rno-miR-382-3p mature miRNA
• Sequence: 49 - AAUCAUUCACGGACAACACUU - 69
• Evidence: experimental ; cloned [2], Northern [2], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267