Stem-loop sequence rno-mir-369

Accession

MI0003551 (change log)

Description

Rattus norvegicus miR-369 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

8 open access papers mention rno-mir-369
(12 sentences)

Stem-loop

         u  ag               ua      cuu  c 
5' gguacu ga  ggagaucgaccgugu  uauucg   ag u
   |||||| ||  |||||||||||||||  ||||||   ||  
3' cuauga cu  uuucuaguugguaca  auaagc   uc g
         -  cu               ua      --u  a 

Deep sequencing

146030 reads, 81.8 reads per million, 423 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133893693-133893771 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000053620 ; Mir3578-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-369

• rno-mir-3592: chr6: 133884161-133884276 [-]
• rno-mir-382: chr6: 133884178-133884257 [+]
• rno-mir-134: chr6: 133884547-133884619 [+]
• rno-mir-668: chr6: 133885141-133885208 [+]
• rno-mir-485: chr6: 133885299-133885377 [+]
• rno-mir-154: chr6: 133888586-133888669 [+]
• rno-mir-496: chr6: 133889283-133889361 [+]
• rno-mir-377: chr6: 133890690-133890761 [+]
• rno-mir-541: chr6: 133892655-133892744 [+]
• rno-mir-409b: chr6: 133893418-133893497 [-]
• rno-mir-409a: chr6: 133893419-133893495 [+]
• rno-mir-412: chr6: 133893571-133893640 [+]
• rno-mir-3578: chr6: 133893672-133893788 [-]
• rno-mir-369: chr6: 133893693-133893771 [+]
• rno-mir-410: chr6: 133893997-133894072 [+]
• rno-mir-3072: chr6: 133898795-133898905 [+]

Database links

• EntrezGene:Mir369
• miRBase Tracker:MI0003551

Mature sequence rno-miR-369-5p

• Accession: MIMAT0003206
• Sequence: 14 - agaucgaccguguuauauucgc - 35
• Deep sequencing: 86499 reads, 389 experiments
• Evidence: experimental; cloned [2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-369-5p
  • miRDB:rno-miR-369-5p
  • microrna.org:rno-miR-369-5p

Mature sequence rno-miR-369-3p

• Accession: MIMAT0003207
• Sequence: 49 - aauaauacaugguugaucuuu - 69
• Deep sequencing: 59519 reads, 386 experiments
• Evidence: experimental; cloned [2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-369-3p
  • miRDB:rno-miR-369-3p
  • microrna.org:rno-miR-369-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).