Stem-loop sequence hsa-mir-582

Accession

MI0003589 (change log)

Symbol

HGNC:MIR582

Description

Homo sapiens miR-582 stem-loop

Gene family

MIPF0000417; mir-582

Literature search

36 open access papers mention hsa-mir-582
(203 sentences)

Stem-loop

   ----------auc  ug       auua                   uaaucu 
5'              ug  cucuuug    caguuguucaaccaguuac      a
                ||  |||||||    |||||||||||||||||||       
3'              ac  gggaaac    gucaacaaguuggucaaug      a
   uuacaaagaugaa  gu       ccaa                   uuaauc 

Deep sequencing

65718 reads, 152 reads per million, 154 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr5: 59703606-59703703 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000368094 ; PDE4D-003; intron 1

  OTTHUMT00000368095 ; PDE4D-004; intron 1

  OTTHUMT00000368099 ; PDE4D-008; intron 1

  OTTHUMT00000368097 ; PDE4D-006; intron 1

  OTTHUMT00000368098 ; PDE4D-007; intron 1

  OTTHUMT00000368100 ; PDE4D-009; intron 1

  OTTHUMT00000368101 ; PDE4D-010; intron 1

  ENST00000502484 ; PDE4D-003; intron 1

  ENST00000509355 ; PDE4D-004; intron 1

  ENST00000506024 ; PDE4D-008; intron 1

  ENST00000506510 ; PDE4D-006; intron 1

  ENST00000511382 ; PDE4D-007; intron 1

  ENST00000505507 ; PDE4D-009; intron 1

  ENST00000515835 ; PDE4D-010; intron 1

Database links

• EntrezGene:MIR582
• HGNC:MIR582
• RNAcentral:URS000068CA2F_9606
• miRBase Tracker:MI0003589

Mature sequence hsa-miR-582-5p

• Accession: MIMAT0003247
• Previous IDs: hsa-miR-582
• Sequence: 16 - uuacaguuguucaaccaguuacu - 38
• Deep sequencing: 49970 reads, 152 experiments
• Evidence: experimental; Microarray [1], RT-PCR [1], SAGE [1], cloned [2]
• Database links:
  • RNAcentral:URS00000B0E50_9606
• Predicted targets:
  • TargetMiner:hsa-miR-582-5p
  • TargetScanVert:hsa-miR-582-5p
  • miRDB:hsa-miR-582-5p
  • microrna.org:hsa-miR-582-5p

Mature sequence hsa-miR-582-3p

• Accession: MIMAT0004797
• Sequence: 53 - uaacugguugaacaacugaacc - 74
• Deep sequencing: 15745 reads, 147 experiments
• Evidence: experimental; cloned [2-3]
• Database links:
  • RNAcentral:URS00002573C3_9606
• Predicted targets:
  • TargetMiner:hsa-miR-582-3p
  • TargetScanVert:hsa-miR-582-3p
  • miRDB:hsa-miR-582-3p
  • microrna.org:hsa-miR-582-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).