Stem-loop sequence hsa-mir-550a-1

Accession

MI0003600 (change log)

Previous IDs

hsa-mir-550-1

Symbol

HGNC:MIR550A1

Description

Homo sapiens miR-550a-1 stem-loop

Gene family

MIPF0000334; mir-550

Literature search

18 open access papers mention hsa-mir-550a-1
(113 sentences)

Stem-loop

   u  u    u c   cu   gca                  g c     gu 
5'  ga gcuu g ugg  ggu   gugccugagggaguaaga c cuguu  u
    || |||| | |||  |||   |||||||||||||||||| | |||||  g
3'  cu ugaa c acc  cua   cacggacucccucauucu g gauag  u
   u  c    - a   -u   ---                  - u     aa 

Deep sequencing

8808 reads, 16.9 reads per million, 154 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr7: 30289794-30289890 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-550a-1

• hsa-mir-550a-1: chr7: 30289794-30289890 [+]
• hsa-mir-550b-1: chr7: 30289794-30289890 [-]

Database links

• EntrezGene:MIR550-1
• HGNC:MIR550A1
• RNAcentral:URS0000652210_9606
• miRBase Tracker:MI0003600

Mature sequence hsa-miR-550a-5p

• Accession: MIMAT0004800
• Previous IDs: hsa-miR-550;hsa-miR-550a
• Sequence: 22 - agugccugagggaguaagagccc - 44
• Deep sequencing: 8584 reads, 140 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00003FFA6C_9606
• Predicted targets:
  • TargetMiner:hsa-miR-550a-5p
  • TargetScanVert:hsa-miR-550a-5p
  • miRDB:hsa-miR-550a-5p
  • microrna.org:hsa-miR-550a-5p

Mature sequence hsa-miR-550a-3p

• Accession: MIMAT0003257
• Previous IDs: hsa-miR-550;hsa-miR-550*;hsa-miR-550a*
• Sequence: 61 - ugucuuacucccucaggcacau - 82
• Deep sequencing: 13506 reads, 136 experiments
• Evidence: experimental; RAKE [1], Illumina [2]
• Database links:
  • RNAcentral:URS00001F14FE_9606
• Predicted targets:
  • TargetMiner:hsa-miR-550a-3p
  • TargetScanVert:hsa-miR-550a-3p
  • miRDB:hsa-miR-550a-3p
  • microrna.org:hsa-miR-550a-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).