Stem-loop sequence hsa-mir-598

Accession

MI0003610 (change log)

Symbol

HGNC:MIR598

Description

Homo sapiens miR-598 stem-loop

Gene family

MIPF0000393; mir-598

Literature search

14 open access papers mention hsa-mir-598
(27 sentences)

Stem-loop

   gcuugaugaugcugcugaugcu         cc     gu  g   uggaa 
5'                       ggcggugau  cgaug  gu agc     a
                         |||||||||  |||||  || |||      
3'                       cugcuacug  gcuac  ca ucg     u
   ------gagccuacuacuacua         uu     ug  -   ugggg 

Deep sequencing

214505 reads, 138 reads per million, 144 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 11035206-11035302 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000383958 ; XKR6-002; intron 1

  OTTHUMT00000383959 ; XKR6-004; intron 1

  ENST00000416569 ; XKR6-002; intron 1

  ENST00000529336 ; XKR6-004; intron 1

Database links

• EntrezGene:MIR598
• HGNC:MIR598
• RNAcentral:URS0000669010_9606
• miRBase Tracker:MI0003610

Mature sequence hsa-miR-598-5p

• Accession: MIMAT0026620
• Sequence: 24 - gcggugaucccgauggugugagc - 46
• Deep sequencing: 150 reads, 31 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:hsa-miR-598-5p
  • miRDB:hsa-miR-598-5p

Mature sequence hsa-miR-598-3p

• Accession: MIMAT0003266
• Sequence: 61 - uacgucaucguugucaucguca - 82
• Deep sequencing: 214225 reads, 143 experiments
• Evidence: experimental; Microarray [1], SAGE [1], cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS000028FD1A_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-598-3p
  • miRDB:hsa-miR-598-3p
  • microrna.org:hsa-miR-598-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).