Stem-loop sequence hsa-mir-548a-3

Accession

MI0003612 (change log)

Symbol

HGNC:MIR548A3

Description

Homo sapiens miR-548a-3 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

56 open access papers mention hsa-mir-548a-3
(170 sentences)

Stem-loop

   ccuagaaugu     g  c                 g      a     ac 
5'           uauua gu ggugcaaaaguaauugc aguuuu ccauu  u
             ||||| || ||||||||||||||||| |||||| |||||   
3'           auaau ca ccacguuuucauuaacg ucaaaa gguaa  u
   -------uuc     g  a                 g      c     cu 

Deep sequencing

7961 reads, 18.7 reads per million, 123 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 104484369-104484465 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR548A3
• HGNC:MIR548A3
• RNAcentral:URS000075E95F_9606
• miRBase Tracker:MI0003612

Mature sequence hsa-miR-548a-5p

• Accession: MIMAT0004803
• Sequence: 25 - aaaaguaauugcgaguuuuacc - 46
• Deep sequencing: 643 reads, 77 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetMiner:hsa-miR-548a-5p
  • TargetScanVert:hsa-miR-548a-5p
  • miRDB:hsa-miR-548a-5p
  • microrna.org:hsa-miR-548a-5p

Mature sequence hsa-miR-548a-3p

• Accession: MIMAT0003251
• Previous IDs: hsa-miR-548a
• Sequence: 61 - caaaacuggcaauuacuuuugc - 82
• Deep sequencing: 21333 reads, 118 experiments
• Evidence: experimental; SAGE [1], cloned [2]
• Database links:
  • RNAcentral:URS000038037E_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548a-3p
  • TargetScanVert:hsa-miR-548a-3p
  • miRDB:hsa-miR-548a-3p
  • microrna.org:hsa-miR-548a-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).