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miRBase |
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Stem-loop sequence hsa-mir-548c |
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Accession | MI0003630 (change log) | |||||
Symbol | HGNC:MIR548C | |||||
Description | Homo sapiens miR-548c stem-loop | |||||
Gene family | MIPF0000317; mir-548 | |||||
Literature search |
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58 open access papers mention hsa-mir-548c | |||||
Stem-loop |
cauuggcauc c cau u 5' uauuagguuggugcaaaaguaauug gguuuuugc uac u ||||||||||||||||||||||||| ||||||||| ||| u 3' auaauucaaccacguuuucauuaac cuaaaaacg aug c -------uuc u --- a |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
Extensive cloning studies suggest that the 5' miRNA may be the predominant one [2]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence hsa-miR-548c-5p |
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Accession | MIMAT0004806 |
Sequence |
25 - aaaaguaauugcgguuuuugcc - 46 |
Deep sequencing | 14743 reads, 154 experiments |
Evidence | experimental; cloned [2] |
Database links |
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Predicted targets |
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Mature sequence hsa-miR-548c-3p |
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Accession | MIMAT0003285 |
Previous IDs | hsa-miR-548c |
Sequence |
61 - caaaaaucucaauuacuuuugc - 82 |
Deep sequencing | 285 reads, 62 experiments |
Evidence | experimental; SAGE [1] |
Predicted targets |
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References |
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1 |
PMID:16505370
"The colorectal microRNAome"
Proc Natl Acad Sci U S A. 103:3687-3692(2006).
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2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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