Stem-loop sequence hsa-mir-641

Accession

MI0003656 (change log)

Symbol

HGNC:MIR641

Description

Homo sapiens miR-641 stem-loop

Gene family

MIPF0000679; mir-641

Literature search

10 open access papers mention hsa-mir-641
(32 sentences)

Stem-loop

   -u      a                    ag            ccucu u 
5'   ggguga aggaaggaaagacauaggau  agucaccucugu     g c
     |||||| ||||||||||||||||||||  ||||||||||||     |  
3'   cccauu uccuuccuuucuguauccug  ucaguggagaua     c c
   uc      c                    --            uccau u 

Deep sequencing

6653 reads, 4.14 reads per million, 145 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 40282543-40282641 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR641
• HGNC:MIR641
• RNAcentral:URS000075CBEE_9606
• miRBase Tracker:MI0003656

Mature sequence hsa-miR-641

• Accession: MIMAT0003311
• Sequence: 16 - aaagacauaggauagagucaccuc - 39
• Deep sequencing: 6188 reads, 138 experiments
• Evidence: experimental; SAGE [1]
• Database links:
  • RNAcentral:URS000039D790_9606
• Predicted targets:
  • TargetMiner:hsa-miR-641
  • TargetScanVert:hsa-miR-641
  • miRDB:hsa-miR-641
  • microrna.org:hsa-miR-641

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).