miRBase entry: sv40-mir-S1

Stem-loop sv40-mir-S1


Accession
MI0003689
Description
Simian virus 40 sv40-mir-S1 precursor miRNA


Sequence

ugaacagacugugagggcUGAGGGGCCUGAAAUGAGCCUUgagacugugaaucaauGCCUGUUUCAUGCCCUGAGUcuuccauguucu
.(((((...((.(((((((..(((((.(((((((.((.((((.........)))).)).))))))).))))).)))))))))))))).

Structure
u     gac  u       GA     C       A  C    gac 
 gaaca   ug gagggcU  GGGGC UGAAAUG GC UUga   u
 |||||   || |||||||  ||||| ||||||| || ||||   g
 cuugu   ac cuucUGA  UCCCG ACUUUGU CG aacu   u
u     ---  -       -G     U       C  u    aag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sv40-miR-S1-5p

Accession MIMAT0003344
Description Simian virus 40 sv40-miR-S1-5p mature miRNA
Sequence 19 - UGAGGGGCCUGAAAUGAGCCUU - 40
Evidence experimental
Northern [1]

Mature sv40-miR-S1-3p

Accession MIMAT0003345
Description Simian virus 40 sv40-miR-S1-3p mature miRNA
Sequence 57 - GCCUGUUUCAUGCCCUGAGU - 76
Evidence experimental
Northern [1]

References

  1. PubMed ID: 15931223
    SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells
    "Sullivan CS, Grundhoff AT, Tevethia S, Pipas JM, Ganem D"
    "Nature (2005) 435:682-686