Stem-loop sequence gga-mir-9-1

Accession

MI0003694 (change log)

Description

Gallus gallus miR-9-1 stem-loop

Gene family

MIPF0000014; mir-9

Literature search

19 open access papers mention gga-mir-9-1
(330 sentences)

Stem-loop

   uu    u       c c       a       g     g   a 
5'   gggu gguuuuu u uuugguu ucuagcu uauga ugu u
     |||| ||||||| | ||||||| ||||||| ||||| ||| g
3'   cucg ccaaaaa g aagccaa agaucga auacu aua u
   cg    c       u u       g       a     -   g 

Deep sequencing

6248151 reads, 6.37e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr28: 3623171-3623258 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-9-1

• gga-mir-1621: chr28: 3620263-3620333 [+]
• gga-mir-1565: chr28: 3621530-3621611 [+]
• gga-mir-9-1: chr28: 3623171-3623258 [+]

Database links

• EntrezGene:MIR9-1
• RNAcentral:URS000075E8AF_9031
• miRBase Tracker:MI0003694

Mature sequence gga-miR-9-5p

• Accession: MIMAT0001195
• Previous IDs: gga-miR-9
• Sequence: 16 - ucuuugguuaucuagcuguauga - 38
• Deep sequencing: 23818269 reads, 5 experiments
• Evidence: by similarity; MI0000466

Mature sequence gga-miR-9-3p

• Accession: MIMAT0003350
• Previous IDs: gga-miR-9*
• Sequence: 54 - uaaagcuagagaaccgaaugu - 74
• Deep sequencing: 293426 reads, 5 experiments
• Evidence: by similarity; MI0000466
• Database links:
  • RNAcentral:URS000075A84F_9031
• Predicted targets:
  • TargetScanVert:gga-miR-9-3p
  • miRDB:gga-miR-9-3p