miRBase entry: gga-mir-489

Stem-loop gga-mir-489


Accession
MI0003708
Description
Gallus gallus gga-mir-489 precursor miRNA
Gene family
MIPF0000111; mir-489

Literature search
2 open access papers mention gga-mir-489
(3 sentences)

Sequence

2306 reads, 31 reads per million, 5 experiments
gugguggcuuggUGGUCGUAUGUAUGACGUCAUUuacuuggacuuuuaggAGUGACAUCAUAUGUACGGCUGCuaaacugcugc
(((((((.(((((((((((((((((((.((((((..(((((....))))))))))).))))))))))))))))))).)))))))

Structure
       c                   C      ua     a 
guggugg uuggUGGUCGUAUGUAUGA GUCAUU  cuugg c
||||||| ||||||||||||||||||| ||||||  |||||  
cgucguc aauCGUCGGCAUGUAUACU CAGUGA  ggauu u
       a                   A      --     u 


Annotation confidence High
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Genome context
chr2: 23147300-23147383 [-]

Database links

Mature gga-miR-489-3p

Accession MIMAT0003365
Description Gallus gallus gga-miR-489-3p mature miRNA
Sequence 51 - AGUGACAUCAUAUGUACGGCUGC - 73
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature gga-miR-489-5p

Accession MIMAT0026632
Description Gallus gallus gga-miR-489-5p mature miRNA
Sequence 13 - UGGUCGUAUGUAUGACGUCAUU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45