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miRBase |
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Stem-loop sequence rno-mir-378a |
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Accession | MI0003719 (change log) | |||||
Previous IDs | rno-mir-378 | |||||
Description | Rattus norvegicus miR-378 stem-loop | |||||
Gene family | MIPF0000168; mir-378 | |||||
Literature search |
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27 open access papers mention rno-mir-378a | |||||
Stem-loop |
- g c ugu ccu 5' gg cu cugacuccaggucc guguua c || || |||||||||||||| |||||| 3' cc ga gacugagguucagg cacgau g u g a --u aaa |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-378a-5p |
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Accession | MIMAT0003378 |
Previous IDs | rno-miR-378;rno-miR-378* |
Sequence |
4 - cuccugacuccagguccugugu - 25 |
Deep sequencing | 108193 reads, 489 experiments |
Evidence | experimental; SOLiD [3] |
Predicted targets |
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Mature sequence rno-miR-378a-3p |
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Accession | MIMAT0003379 |
Previous IDs | rno-miR-422b;rno-miR-378 |
Sequence |
42 - acuggacuuggagucagaagg - 62 |
Deep sequencing | 16577651 reads, 508 experiments |
Evidence | experimental; cloned [1-2], Northern [1], SOLiD [3] |
Predicted targets |
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References |
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1 | |
2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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