miRBase entry: rno-mir-664-1

Stem-loop rno-mir-664-1


Accession
MI0003722
Description
Rattus norvegicus rno-mir-664-1 precursor miRNA
Gene family
MIPF0000300; mir-664

Literature search
5 open access papers mention rno-mir-664-1
(15 sentences)

Sequence

34523 reads, 36 reads per million, 471 experiments
CUGGCUGGGGAAAAAGAUUGGauagaaaacauuauucUAUUCAUUUACUCCCCAGCCUA
..(((((((((....((.(((((((((.......))))))))).))..)))))))))..

Structure
CU         AAAA  U         aa 
  GGCUGGGGA    GA UGGauagaa  c
  |||||||||    || |||||||||  a
  CCGACCCCU    UU ACUUAUcuu  u
AU         --CA  U         au 


Annotation confidence Not enough data
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Genome context
chr18: 47488028-47488086 [+]

Database links

Mature rno-miR-664-1-5p

Accession MIMAT0017228
Description Rattus norvegicus rno-miR-664-1-5p mature miRNA
Sequence 1 - CUGGCUGGGGAAAAAGAUUGG - 21
Evidence experimental
SOLiD [2]

Mature rno-miR-664-3p

Accession MIMAT0003382
Description Rattus norvegicus rno-miR-664-3p mature miRNA
Sequence 38 - UAUUCAUUUACUCCCCAGCCUA - 59
Evidence experimental
cloned [1], Northern [1], SOLiD [2]

References

  1. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249