miRBase entry: rlcv-mir-rL1-1

Stem-loop rlcv-mir-rL1-1


Accession
MI0003737
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-1 precursor miRNA
Gene family
MIPF0000331; mir-BHRF1-1


Sequence

ggccggcuccuuauUAACCUGAUCAGCCCCGGGGUUgccugucuuagcacuaaCUCCGGGCCUGAAGAGGUUGACaagaaggguc
((((..((.(((.(((((((..((((.((((((((((..(((....))).)))))))))).))))..))))))).))).))))))

Structure
    gg  c   a       GA    C          cc   c 
ggcc  cu cuu uUAACCU  UCAG CCCGGGGUUg  ugu u
||||  || ||| |||||||  |||| ||||||||||  |||  
cugg  ga gaa AGUUGGA  AGUC GGGCCUCaau  acg u
    --  a   C       GA    C          -c   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-1-5p

Accession MIMAT0003427
Description Rhesus lymphocryptovirus rlcv-miR-rL1-1-5p mature miRNA
Sequence 15 - UAACCUGAUCAGCCCCGGGGUU - 36
Evidence experimental
cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-1-3p

Accession MIMAT0019084
Description Rhesus lymphocryptovirus rlcv-miR-rL1-1-3p mature miRNA
Sequence 54 - CUCCGGGCCUGAAGAGGUUGAC - 75
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 16557291
    Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
    Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
    PLoS Pathog (2006) 2:e23

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635