miRBase entry: rlcv-mir-rL1-3

Stem-loop rlcv-mir-rL1-3


Accession
MI0003739
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-3 precursor miRNA


Sequence

cuggguccucggggggCGGUGGAGACCGCGGGUGCGGUGauugcuugacccUCGCACCUCGCCGUCUCUACUGCucgccggguacgucugg
....((.(((((.(((((((((((((.(((((((((((.(.....).)))...))))).))).))))))))))))).))))).))......

Structure
--cugg  c     g             C   -     ---   G u 
      gu cucgg gggCGGUGGAGAC GCG GGUGC   GGU a u
      || ||||| ||||||||||||| ||| |||||   ||| | g
      ca gggcc cuCGUCAUCUCUG CGC CCACG   cca u c
ggucug  u     g             C   U     CUc   g u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-3-3p

Accession MIMAT0003429
Description Rhesus lymphocryptovirus rlcv-miR-rL1-3-3p mature miRNA
Sequence 52 - UCGCACCUCGCCGUCUCUACUGC - 74
Evidence experimental
cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-3-5p

Accession MIMAT0037329
Description Rhesus lymphocryptovirus rlcv-miR-rL1-3-5p mature miRNA
Sequence 17 - CGGUGGAGACCGCGGGUGCGGUG - 39
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 16557291
    Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
    Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
    PLoS Pathog (2006) 2:e23

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635