Stem-loop rlcv-mir-rL1-8

Accession

MI0003744

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-8 precursor miRNA

Gene family

MIPF0000326; mir-BART5

Sequence

uugcugcggcaccgUAAGGUGAAUAUAGCUGCCCAUUgaugucuguuuagaacccGGUGGGCCGCAGUUCACCUACAgugacgcaguga
((((((((.(((.(((.(((((((...((.((((((((...(((....)))...)))))))).)).)))))))))).))).))))))))

Structure

        g   c   A       AUA  U        aug   g 
uugcugcg cac gUA GGUGAAU   GC GCCCAUUg   ucu u
|||||||| ||| ||| |||||||   || ||||||||   |||  
agugacgc gug CAU CCACUUG   CG CGGGUGGc   aga u
        a   A   -       --A  C        cca   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-8-5p

• Accession: MIMAT0003437
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-8-5p mature miRNA
• Sequence: 15 - UAAGGUGAAUAUAGCUGCCCAUU - 37
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

Mature rlcv-miR-rL1-8-3p

• Accession: MIMAT0019087
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-8-3p mature miRNA
• Sequence: 56 - GGUGGGCCGCAGUUCACCUACA - 77
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


3. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


4. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635