Stem-loop rlcv-mir-rL1-9

Accession

MI0003745

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-9 precursor miRNA

Gene family

MIPF0000321; mir-BART17

Sequence

gccugcggaacccUAAGAGGGGGGCCUGCACGCCGAGguuauuucccagcccuUCGAUGCAUGGUCCCCCCUUAGUggacugcaggc
((((((((..(((((((.((((((((((((((..(.((((.......)))))..)).)))).))))))))))))).)).))))))))

Structure

        aa  -     A        -    -  CC A    au 
gccugcgg  cc cUAAG GGGGGGCC UGCA CG  G Gguu  u
||||||||  || ||||| |||||||| |||| ||  | ||||  u
cggacguc  gg GAUUC CCCCCUGG ACGU GC  c ccga  c
        -a  U     -        U    A  Uu -    cc 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-9-3p

• Accession: MIMAT0003438
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-9-3p mature miRNA
• Sequence: 54 - UCGAUGCAUGGUCCCCCCUUAGU - 76
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-9-5p

• Accession: MIMAT0037330
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-9-5p mature miRNA
• Sequence: 14 - UAAGAGGGGGGCCUGCACGCCGAG - 37
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635