miRBase entry: rlcv-mir-rL1-10

Stem-loop rlcv-mir-rL1-10


Accession
MI0003746
Description
Rhesus lymphocryptovirus rlcv-mir-rL1-10 precursor miRNA


Sequence

gugguccucugacAUCGGGUUUCCGCUGUACUUGCAuaaugagaacuuugUAGUGCGCCGGUGACCUGAUAGcagcggucucac
((((.((.(((..((((((((.(((.((((((.(((............))))))))).))).))))))))..))).)).).)))

Structure
   - u  u   ac        U   C      U   uaaug 
gug g cc cug  AUCGGGUU CCG UGUACU GCA     a
||| | || |||  |||||||| ||| |||||| |||      
cac c gg gac  UAGUCCAG GGC GCGUGA Ugu     g
   u u  c   GA        U   C      -   uucaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rlcv-miR-rL1-10-3p

Accession MIMAT0003439
Description Rhesus lymphocryptovirus rlcv-miR-rL1-10-3p mature miRNA
Sequence 51 - UAGUGCGCCGGUGACCUGAUAG - 72
Evidence experimental
cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-10-5p

Accession MIMAT0019088
Description Rhesus lymphocryptovirus rlcv-miR-rL1-10-5p mature miRNA
Sequence 14 - AUCGGGUUUCCGCUGUACUUGCA - 36
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 16557291
    Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
    Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
    PLoS Pathog (2006) 2:e23

  2. PubMed ID: 20219930
    Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
    "Riley KJ, Rabinowitz GS, Steitz JA"
    "J Virol (2010) 84:5148-5157

  3. PubMed ID: 24257599
    Evolutionary conservation of primate lymphocryptovirus microRNA targets
    "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
    "J Virol (2014) 88:1617-1635