Stem-loop rlcv-mir-rL1-12

Accession

MI0003748

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-12 precursor miRNA

Sequence

ucaggguacgcucAGACCAGACCAUGCACAGUGGGcgauuaagacauugcucuAACGGUGCAUGGACUGGCUAGAguguuccugg
.(((((.((((((((.((((.((((((((.(((((((((......)))))))..)).)))))))).)))))).))))))))))).

Structure

u     u      -  A    A        A  --       ua 
 caggg acgcuc AG CCAG CCAUGCAC GU  GGGcgau  a
 ||||| |||||| || |||| |||||||| ||  |||||||   
 guccu ugugAG UC GGUC GGUACGUG CA  cucguua  g
g     -      A  -    A        G  Au       ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-12-5p

• Accession: MIMAT0003441
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-12-5p mature miRNA
• Sequence: 14 - AGACCAGACCAUGCACAGUGGG - 35
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-12-3p

• Accession: MIMAT0003442
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-12-3p mature miRNA
• Sequence: 54 - AACGGUGCAUGGACUGGCUAGA - 75
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635