Stem-loop rlcv-mir-rL1-16

Accession

MI0003752

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-16 precursor miRNA

Gene family

MIPF0000322; mir-BART20

Sequence

gagggccaguugAAGCAGGCAUGUCUUCAUUCcugauuuccugauggCAUGAAACACAUGGCCUGUUCCUauuggcaccuu
((((((((((.(.(((((((((((.(((((.((............)).)))))..)))).))))))).).)))))).))))

Structure

    -      u A       -    -C     U  ugauu 
gagg gccagu g AGCAGGC AUGU  UUCAU Cc     u
|||| |||||| | ||||||| ||||  ||||| ||      
uucc cgguua C UUGUCCG UACA  AAGUA gg     c
    a      U C       G    CA     C  uaguc 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-16-5p

• Accession: MIMAT0003447
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-16-5p mature miRNA
• Sequence: 13 - AAGCAGGCAUGUCUUCAUUC - 32
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-16-3p

• Accession: MIMAT0003448
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-16-3p mature miRNA
• Sequence: 48 - CAUGAAACACAUGGCCUGUUCCU - 70
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635