Stem-loop sequence mmu-mir-374b

Accession

MI0004125

Previous IDs

mmu-mir-374

Symbol

MGI:Mir374

Description

Mus musculus miR-374b stem-loop

Gene family

MIPF0000288; mir-374

Stem-loop

gaa  aau  ---ua      ug au                     u 
   ga   cc     cucggg  g  auaauacaaccugcuaagugu c
   ||   ||     ||||||  |  |||||||||||||||||||||  
   cu   gg     gagccu  u  uauuauguuggacgauucacg u
cug  cuc  uauug      gu ac                     a 

Deep sequencing

171935 reads, 97 experiments

Genome context

• Coordinates (GRCm38): chrX: 103573060-103573154 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000044290 ; RP23-423B1.2-002; intron 9

  OTTMUST00000044239 ; RP23-423B1.2-001; intron 10

  OTTMUST00000044293 ; RP23-423B1.2-005; intron 10

  OTTMUST00000044291 ; RP23-423B1.2-003; intron 10

  ENSMUST00000130063 ; B230206F22Rik-002; intron 9

  ENSMUST00000156211 ; B230206F22Rik-001; intron 10

  ENSMUST00000145803 ; B230206F22Rik-005; intron 10

  ENSMUST00000156240 ; B230206F22Rik-003; intron 10

Clustered miRNAs

< 10kb from mmu-mir-374b

• mmu-mir-374c: chrX: 103573085-103573133 [+]
• mmu-mir-374b: chrX: 103573060-103573154 [-]
• mmu-mir-421: chrX: 103572921-103572996 [-]

Database links

• ENTREZGENE: 751546;Mir374
• MGI: 3629958;Mir374

Mature sequence mmu-miR-374b-5p

• Accession: MIMAT0003727
• Previous IDs: mmu-miR-374-5p;mmu-miR-374;mmu-miR-374-5p
• Sequence: 22 - auauaauacaaccugcuaagug - 43
• Deep sequencing: 51665 reads, 82 experiments
• Evidence: experimental; cloned [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-374b-5p
  • MICRORNA.ORG:mmu-miR-374b-5p
  • MIRDB:mmu-miR-374b-5p
  • RNA22-MMU:mmu-miR-374b-5p
  • TARGETSCAN-VERT:mmu-miR-374

Mature sequence mmu-miR-374b-3p

• Accession: MIMAT0003728
• Previous IDs: mmu-miR-374-3p;mmu-miR-374*;mmu-miR-374-3p
• Sequence: 59 - gguuguauuaucauuguccgag - 80
• Deep sequencing: 2356 reads, 71 experiments
• Evidence: experimental; MPSS [1], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-374b-3p
  • MICRORNA.ORG:mmu-miR-374b-3p
  • MIRDB:mmu-miR-374b-3p
  • RNA22-MMU:mmu-miR-374b-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).