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miRBase |
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Stem-loop sequence mmu-mir-216b |
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Accession | MI0004126 (change log) | |||||
Symbol | MGI:Mir216b | |||||
Description | Mus musculus miR-216b stem-loop | |||||
Gene family | MIPF0000054; mir-216 | |||||
Literature search |
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24 open access papers mention mmu-mir-216b | |||||
Stem-loop |
u g ga c a --aug ac 5' ug cagacugg aaucucugcagg aa ugug uc u || |||||||| |||||||||||| || |||| || 3' ac gucugacu uuagagaugucc uu acac ag g a a uc a c accaa aa |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence mmu-miR-216b-5p |
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Accession | MIMAT0003729 |
Previous IDs | mmu-miR-216b |
Sequence |
14 - aaaucucugcaggcaaauguga - 35 |
Deep sequencing | 12959 reads, 44 experiments |
Evidence | experimental; MPSS [1], cloned [2], Illumina [3-4] |
Database links |
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Predicted targets |
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Mature sequence mmu-miR-216b-3p |
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Accession | MIMAT0017233 |
Previous IDs | mmu-miR-216b* |
Sequence |
54 - acacuuaccuguagagauucuu - 75 |
Deep sequencing | 60 reads, 10 experiments |
Evidence | experimental; Illumina [4] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:16582102
"The expression profile of microRNAs in mouse embryos"
Nucleic Acids Res. 34:1765-1771(2006).
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2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:20215419
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
Mol Hum Reprod. 16:463-471(2010).
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4 |
PMID:20413612
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
Genes Dev. 24:992-1009(2010).
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