miRBase entry: mmu-mir-1249

Stem-loop mmu-mir-1249


Accession
MI0004132
Symbol
MGI: Mir1249
Description
Mus musculus mmu-mir-1249 precursor miRNA
Gene family
MIPF0000667; mir-1249

Literature search
8 open access papers mention mmu-mir-1249
(11 sentences)

Sequence

6746 reads, 68 reads per million, 94 experiments
cgauucuuguuugcguggggAGGAGGGAGGGGAUGGGCCAAGUUCccuaugccuggaACGCCCUUCCCCCCCUUCUUCAccuggcgaacuccuacucg
(((.....((((((..(((((((((((.(((((.((((...(((((........))))))))).)))))))))))))).))..))))))......)))

Structure
   -uucuu      gu  -         A     U    CAA     cua 
cga      guuugc  gg ggAGGAGGG GGGGA GGGC   GUUCc   u
|||      ||||||  || ||||||||| ||||| ||||   |||||    
gcu      caagcg  cc CUUCUUCCC CCCCU CCCG   CAagg   g
   cauccu      gu  A         -     U    ---     ucc 


Annotation confidence High
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Comments
This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later in mouse ES cells [2].

Genome context
chr15: 84951526-84951623 [-]

Database links

Mature mmu-miR-1249-5p

Accession MIMAT0014804
Description Mus musculus mmu-miR-1249-5p mature miRNA
Sequence 21 - AGGAGGGAGGGGAUGGGCCAAGUUC - 45
Evidence experimental
Illumina [3]
Database links
Predicted targets

Mature mmu-miR-1249-3p

Accession MIMAT0010560
Description Mus musculus mmu-miR-1249-3p mature miRNA
Sequence 58 - ACGCCCUUCCCCCCCUUCUUCA - 79
Evidence experimental
RAKE [1], 454 [2], Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298

  3. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102