Stem-loop mmu-mir-1843a

Accession

MI0004155

Symbol

MGI: Mir1843a

Description

Mus musculus mmu-mir-1843a precursor miRNA

Gene family

MIPF0001119; mir-1843

Literature search

2 open access papers mention mmu-mir-1843a
(8 sentences)

Sequence

57237 reads, 138 reads per million, 101 experiments

gaaUAUGGAGGUCUCUGUCUGACUuagaauagcuggcugagUCUGAUCGUUCACCUCCAUACAac
...(((((((((..(.(((.(((((((.........))))))).))).)...)))))))))....

Structure

-gaa         -CU U   U       aau 
    UAUGGAGGU   C GUC GACUuag   a
    |||||||||   | ||| |||||||   g
    AUACCUCCA   G UAG CUgaguc   c
caAC         CUU C   U       ggu 

Annotation confidence High

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2]. This sequence was retracted by the authors prior to publication [2].

Genome context

chr12: 80391613-80391677 [-]

Mature mmu-miR-1843a-5p

• Accession: MIMAT0014805
• Description: Mus musculus mmu-miR-1843a-5p mature miRNA
• Sequence: 4 - UAUGGAGGUCUCUGUCUGACU - 24
• Evidence: experimental ; Illumina [2-3]

Mature mmu-miR-1843a-3p

• Accession: MIMAT0014806
• Description: Mus musculus mmu-miR-1843a-3p mature miRNA
• Sequence: 42 - UCUGAUCGUUCACCUCCAUACA - 63
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298


3. PubMed ID: 20935160
   Next-generation sequencing identifies the natural killer cell microRNA transcriptome
   "Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER"
   "Genome Res (2010) 20:1590-1604