Stem-loop mmu-mir-672

Accession

MI0004258

Symbol

MGI: Mir672

Description

Mus musculus mmu-mir-672 precursor miRNA mir-672

Gene
family

RF00911; mir-672

Literature search

12 open access papers mention mmu-mir-672
(46 sentences)

Sequence

40389 reads, 153 reads per million, 92 experiments

gauggugaucuagcccuuuaguuuUGAGGUUGGUGUACUGUGUGUGAguauacauauuuaucACACACAGUCACUAUCUUCGAaagugagggugcacauc
(((....)))..((((((((.((((((((.(((((.(((((((((((..(.......)..)))))))))))))))).)))))))).)))))).)).....

Structure

gauggugaucua  -      g        U     U           gu ua 
            gc ccuuua uuuUGAGG UGGUG ACUGUGUGUGA  a  c
            || |||||| |||||||| ||||| |||||||||||  |  a
            cg gggagu aaAGCUUC AUCAC UGACACACAcu  u  u
-------cuaca  u      g        U     -           au ua 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

chrX: 104116175-104116274 [-]

Mature mmu-miR-672-5p

• Accession: MIMAT0003735
• Description: Mus musculus mmu-miR-672-5p mature miRNA
• Sequence: 25 - UGAGGUUGGUGUACUGUGUGUGA - 47
• Evidence: experimental ; MPSS [1], cloned [2-3], Illumina [4-5]

Mature mmu-miR-672-3p

• Accession: MIMAT0017241
• Description: Mus musculus mmu-miR-672-3p mature miRNA
• Sequence: 63 - ACACACAGUCACUAUCUUCGA - 83
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771


5. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298