Stem-loop mmu-mir-496a

Accession

MI0004589

Symbol

MGI: Mir496a

Description

Mus musculus mmu-mir-496a precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

6 open access papers mention mmu-mir-496a
(12 sentences)

Sequence

9826 reads, 280 reads per million, 62 experiments

aguguucgaauggAGGUUGCCCAUGGUGUGUUCAuuuuauuuaugaUGAGUAUUACAUGGCCAAUCUCcuuucggcacu
(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))

Structure

     u    u        C     GU         uua 
agugu cgaa ggAGGUUG CCAUG  GUGUUCAuu   u
||||| |||| |||||||| |||||  |||||||||    
ucacg gcuu cCUCUAAC GGUAC  UAUGAGUag   u
     -    u        C     AU         uau 

Annotation confidence High

Genome context

chr12: 109739119-109739197 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from mmu-mir-496a

Mature mmu-miR-496a-5p

• Accession: MIMAT0017244
• Description: Mus musculus mmu-miR-496a-5p mature miRNA
• Sequence: 14 - AGGUUGCCCAUGGUGUGUUCA - 34
• Evidence: experimental ; Illumina [3]

Mature mmu-miR-496a-3p

• Accession: MIMAT0003738
• Description: Mus musculus mmu-miR-496a-3p mature miRNA
• Sequence: 47 - UGAGUAUUACAUGGCCAAUCUC - 68
• Evidence: experimental ; MPSS [1], Illumina [2-3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771